Panda 3d, PYPE, NetBeans IDE 6.8 confusion

If you`ve done above steps correctly then … Yes.

p.s. While you create your New project, in the Section “Name and Location”, you can choose Python Platform -> Python 2.6.4(in your case). Then you don`t need to specify this again.
If you are interested - Open “Python platform” from “Tools” and select “Python 2.6.4”. Click on “Default” and all your new projects will use this “Platform” by default.