|
void | run () |
|
| ProgramBase (const std::string &name=std::string()) |
|
std::string | get_exec_command () const |
| Returns the command that invoked this program, as a shell-friendly string, suitable for pasting into the comments of output files. More...
|
|
virtual void | parse_command_line (int argc, char **argv) |
| Dispatches on each of the options on the command line, and passes the remaining parameters to handle_args(). More...
|
|
void | show_description () |
| Writes the program description to stderr. More...
|
|
void | show_options () |
| Describes each of the available options to stderr. More...
|
|
void | show_text (const std::string &text) |
| Formats the indicated text to stderr with the known _terminal_width. More...
|
|
void | show_text (const std::string &prefix, int indent_width, std::string text) |
| Formats the indicated text and its prefix for output to stderr with the known _terminal_width. More...
|
|
void | show_usage () |
| Writes the usage line(s) to stderr. More...
|
|
void | write_man_page (std::ostream &out) |
| Generates a man page in nroff syntax based on the description and options. More...
|
|
| WithOutputFile (bool allow_last_param, bool allow_stdout, bool binary_output) |
|
void | close_output () |
| Closes the output stream previously opened by get_output(). More...
|
|
std::ostream & | get_output () |
| Returns an output stream that corresponds to the user's intended egg file output–either stdout, or the named output file. More...
|
|
Filename | get_output_filename () const |
| If has_output_filename() returns true, this is the filename that the user specified. More...
|
|
bool | has_output_filename () const |
| Returns true if the user specified an output filename, false otherwise (e.g. More...
|
|
Definition at line 30 of file ptsToBam.h.
The documentation for this class was generated from the following files: